@@ -1,715 +1,367 @@
 $variables
-$variables$`%c%.matrix`
-[1]   0 561
+$variables$.__C__Biodetection
+[1]   0 286
 
-$variables$.__NAMESPACE__.
-[1] 7547   62
-
-$variables$.__S3MethodsTable__.
-[1] 7749   62
-
-$variables$.onAttach
-[1] 7811  820
-
-$variables$.onLoad
-[1] 8631  299
-
-$variables$.packageName
-[1] 8930   57
-
-$variables$add.isolates
-[1] 8987  671
-
-$variables$as.edgelist.sna
-[1] 9658 8752
-
-$variables$as.sociomatrix.sna
-[1] 18410  6439
-
-$variables$bbnam
-[1] 24849   477
-
-$variables$bbnam.actor
-[1] 25326  9516
-
-$variables$bbnam.bf
-[1] 34842  4990
-
-$variables$bbnam.fixed
-[1] 39832  3960
-
-$variables$bbnam.jntlik
-[1] 43792   547
-
-$variables$bbnam.jntlik.slice
-[1] 44339  1004
-
-$variables$bbnam.pooled
-[1] 45343  8158
-
-$variables$bbnam.probtie
-[1] 53501   773
-
-$variables$betweenness
-[1] 54274  3346
-
-$variables$bicomponent.dist
-[1] 57620  2903
-
-$variables$blockmodel
-[1] 60523  6614
-
-$variables$blockmodel.expand
-[1] 67137  2219
-
-$variables$bn
-[1] 69356  8637
-
-$variables$bn.nlpl.dyad
-[1] 77993  1013
-
-$variables$bn.nlpl.edge
-[1] 79006  1634
-
-$variables$bn.nlpl.triad
-[1] 80640  1057
-
-$variables$bn.nltl
-[1] 81697  1000
-
-$variables$bonpow
-[1] 82697  2354
-
-$variables$brokerage
-[1] 85051 10585
-
-$variables$centralgraph
-[1] 95636  1012
-
-$variables$centralization
-[1] 96648  1203
-
-$variables$clique.census
-[1] 97851  3663
-
-$variables$closeness
-[1] 101514   3153
-
-$variables$coef.bn
-[1] 104667    485
-
-$variables$coef.lnam
-[1] 105152    649
-
-$variables$component.dist
-[1] 105801   2769
-
-$variables$component.largest
-[1] 108570   2435
-
-$variables$component.size.byvertex
-[1] 111005   1417
-
-$variables$components
-[1] 112422    718
-
-$variables$connectedness
-[1] 113140   1125
-
-$variables$consensus
-[1] 114265   7392
-
-$variables$cug.test
-[1] 121657   5668
-
-$variables$cugtest
-[1] 127325   3096
-
-$variables$cutpoints
-[1] 130421   2064
-
-$variables$degree
-[1] 132485   2216
-
-$variables$diag.remove
-[1] 134701    901
-
-$variables$dyad.census
-[1] 135602   2866
-
-$variables$efficiency
-[1] 138468   1764
-
-$variables$ego.extract
-[1] 140232   2112
-
-$variables$equiv.clust
-[1] 142344   2171
-
-$variables$eval.edgeperturbation
-[1] 144515    616
-
-$variables$evcent
-[1] 145131   2319
-
-$variables$event2dichot
-[1] 147450   3694
-
-$variables$flowbet
-[1] 151144   4376
-
-$variables$gapply
-[1] 155520   2422
-
-$variables$gclust.boxstats
-[1] 157942   1099
-
-$variables$gclust.centralgraph
-[1] 159041   1357
-
-$variables$gcor
-[1] 160398   3693
-
-$variables$gcov
-[1] 164091   3694
-
-$variables$gden
-[1] 167785   2194
-
-$variables$gdist.plotdiff
-[1] 169979    816
-
-$variables$gdist.plotstats
-[1] 170795   4487
-
-$variables$geodist
-[1] 175282   2175
-
-$variables$gilschmidt
-[1] 177457   1429
-
-$variables$gliop
-[1] 178886   1002
-
-$variables$gplot
-[1] 179888  22817
+$variables$.__C__CD
+[1] 286 283
 
-$variables$gplot.arrow
-[1] 202705   9429
+$variables$.__C__CountsBio
+[1] 569 288
 
-$variables$gplot.layout.adj
-[1] 212134    599
+$variables$.__C__GCbias
+[1] 857 286
 
-$variables$gplot.layout.circle
-[1] 212733    735
+$variables$.__C__Output
+[1] 1143 2240
 
-$variables$gplot.layout.circrand
-[1] 213468    459
+$variables$.__C__PCA
+[1] 3383  284
 
-$variables$gplot.layout.eigen
-[1] 213927   1512
+$variables$.__C__Saturation
+[1] 3667  285
 
-$variables$gplot.layout.fruchtermanreingold
-[1] 215439   2906
+$variables$.__C__lengthbias
+[1] 3952  288
 
-$variables$gplot.layout.geodist
-[1] 218345    597
+$variables$.__C__myInfo
+[1] 4240 1158
 
-$variables$gplot.layout.hall
-[1] 218942    866
-
-$variables$gplot.layout.kamadakawai
-[1] 219808   2573
-
-$variables$gplot.layout.mds
-[1] 222381   1663
-
-$variables$gplot.layout.princoord
-[1] 224044   1500
-
-$variables$gplot.layout.random
-[1] 225544   1322
-
-$variables$gplot.layout.rmds
-[1] 226866    601
-
-$variables$gplot.layout.segeo
-[1] 227467    540
-
-$variables$gplot.layout.seham
-[1] 228007    605
-
-$variables$gplot.layout.spring
-[1] 228612   4757
-
-$variables$gplot.layout.springrepulse
-[1] 233369    463
-
-$variables$gplot.layout.target
-[1] 233832   3612
-
-$variables$gplot.loop
-[1] 237444   4659
-
-$variables$gplot.target
-[1] 242103   3484
-
-$variables$gplot.vertex
-[1] 245587   1623
-
-$variables$gplot3d
-[1] 247210   8292
-
-$variables$gplot3d.arrow
-[1] 255502   3709
-
-$variables$gplot3d.layout.adj
-[1] 259211    601
-
-$variables$gplot3d.layout.eigen
-[1] 259812   1512
-
-$variables$gplot3d.layout.fruchtermanreingold
-[1] 261324   2263
-
-$variables$gplot3d.layout.geodist
-[1] 263587    599
-
-$variables$gplot3d.layout.hall
-[1] 264186    863
-
-$variables$gplot3d.layout.kamadakawai
-[1] 265049   2679
-
-$variables$gplot3d.layout.mds
-[1] 267728   1675
-
-$variables$gplot3d.layout.princoord
-[1] 269403   1569
-
-$variables$gplot3d.layout.random
-[1] 270972   1474
-
-$variables$gplot3d.layout.rmds
-[1] 272446    603
-
-$variables$gplot3d.layout.segeo
-[1] 273049    542
-
-$variables$gplot3d.layout.seham
-[1] 273591    607
-
-$variables$gplot3d.loop
-[1] 274198   3031
-
-$variables$graphcent
-[1] 277229   1811
-
-$variables$grecip
-[1] 279040   4960
-
-$variables$gscor
-[1] 284000   6036
-
-$variables$gscov
-[1] 290036   6037
-
-$variables$gt
-[1] 296073   1256
-
-$variables$gtrans
-[1] 297329   6741
-
-$variables$gvectorize
-[1] 304070   2237
-
-$variables$hdist
-[1] 306307   3865
-
-$variables$hierarchy
-[1] 310172   1696
-
-$variables$infocent
-[1] 311868   3259
-
-$variables$interval.graph
-[1] 315127   2420
-
-$variables$is.connected
-[1] 317547    549
-
-$variables$is.edgelist.sna
-[1] 318096    827
-
-$variables$is.isolate
-[1] 318923   1029
-
-$variables$isolates
-[1] 319952    926
-
-$variables$kcores
-[1] 320878   1770
-
-$variables$kcycle.census
-[1] 322648   3209
-
-$variables$kpath.census
-[1] 325857   3929
-
-$variables$lab.optimize
-[1] 329786   1025
-
-$variables$lab.optimize.anneal
-[1] 330811   5809
-
-$variables$lab.optimize.exhaustive
-[1] 336620   2468
-
-$variables$lab.optimize.gumbel
-[1] 339088   3227
-
-$variables$lab.optimize.hillclimb
-[1] 342315   3891
-
-$variables$lab.optimize.mc
-[1] 346206   2276
-
-$variables$lnam
-[1] 348482  18248
+$variables$.__NAMESPACE__.
+[1] 12405    62
 
-$variables$loadcent
-[1] 366730   2278
+$variables$.__S3MethodsTable__.
+[1] 12607    62
 
-$variables$logMean
-[1] 369008    555
+$variables$`.__T__dat2save:NOISeq`
+[1] 18038    62
 
-$variables$logSub
-[1] 369563    685
+$variables$`.__T__explo.plot:NOISeq`
+[1] 21700    62
 
-$variables$logSum
-[1] 370248    518
+$variables$`.__T__show:methods`
+[1] 185265     63
 
-$variables$lower.tri.remove
-[1] 370766   1043
+$variables$.calcFactorQuantile
+[1] 185328    643
 
-$variables$lubness
-[1] 371809   2301
+$variables$.calcFactorWeighted
+[1] 185971   2087
 
-$variables$make.stochastic
-[1] 374110   4837
+$variables$.calcNormFactors
+[1] 188058   1215
 
-$variables$maxflow
-[1] 378947   2646
+$variables$.packageName
+[1] 189273     60
 
-$variables$mutuality
-[1] 381593    544
+$variables$ARSyNcomponents
+[1] 189333   1768
 
-$variables$nacf
-[1] 382137   3061
+$variables$ARSyNmodel
+[1] 191101   2635
 
-$variables$neighborhood
-[1] 385198   2139
+$variables$ARSyNseq
+[1] 193736   2972
 
-$variables$netcancor
-[1] 387337   6916
+$variables$ASCA.1f
+[1] 196708   2220
 
-$variables$netlm
-[1] 394253  11714
+$variables$ASCA.2f
+[1] 198928   2743
 
-$variables$netlogit
-[1] 405967  12672
+$variables$ASCA.3f
+[1] 201671   3688
 
-$variables$npostpred
-[1] 418639    416
+$variables$ASCAfun.res
+[1] 205359   1279
 
-$variables$nties
-[1] 419055   1235
+$variables$ASCAfun.triple
+[1] 206638   5571
 
-$variables$numperm
-[1] 420290   1333
+$variables$ASCAfun1
+[1] 212209   2782
 
-$variables$plot.bbnam
-[1] 421623    234
+$variables$ASCAfun12
+[1] 214991   3631
 
-$variables$plot.bbnam.actor
-[1] 421857   3064
+$variables$ASCAfun2
+[1] 218622   4050
 
-$variables$plot.bbnam.fixed
-[1] 424921    728
+$variables$CV
+[1] 222672    345
 
-$variables$plot.bbnam.pooled
-[1] 425649   1927
+$variables$DE.plot
+[1] 223017  16368
 
-$variables$plot.blockmodel
-[1] 427576   1990
+$variables$GC.dat
+[1] 239385   7931
 
-$variables$plot.bn
-[1] 429566   3658
+$variables$GC.plot
+[1] 247316   3588
 
-$variables$plot.cug.test
-[1] 433224    731
+$variables$MD
+[1] 250904   1285
 
-$variables$plot.cugtest
-[1] 433955    652
+$variables$MD.plot
+[1] 252189    768
 
-$variables$plot.equiv.clust
-[1] 434607    413
+$variables$MDbio
+[1] 252957   2281
 
-$variables$plot.lnam
-[1] 435020   3655
+$variables$Output
+[1] 255238    462
 
-$variables$plot.qaptest
-[1] 438675    651
+$variables$PCA.GENES
+[1] 255700   1649
 
-$variables$plot.sociomatrix
-[1] 439326   3263
+$variables$PCA.dat
+[1] 257349   1115
 
-$variables$potscalered.mcmc
-[1] 442589    954
+$variables$PCA.plot
+[1] 258464   3098
 
-$variables$prestige
-[1] 443543   4447
+$variables$QCreport
+[1] 261562  15013
 
-$variables$print.bayes.factor
-[1] 447990    616
+$variables$addData
+[1] 276575   5787
 
-$variables$print.bbnam
-[1] 448606    201
+$variables$allMD
+[1] 282362  10266
 
-$variables$print.bbnam.actor
-[1] 448807   2023
+$variables$allMDbio
+[1] 292628   8960
 
-$variables$print.bbnam.fixed
-[1] 450830    866
+$variables$biodetection.dat
+[1] 301588   3499
 
-$variables$print.bbnam.pooled
-[1] 451696   2021
+$variables$biodetection.plot
+[1] 305087   7985
 
-$variables$print.blockmodel
-[1] 453717   1587
+$variables$busca
+[1] 313072    426
 
-$variables$print.bn
-[1] 455304    872
+$variables$cd.dat
+[1] 313498   4515
 
-$variables$print.cug.test
-[1] 456176    644
+$variables$cd.plot
+[1] 318013   2357
 
-$variables$print.cugtest
-[1] 456820    449
+$variables$countsbio.dat
+[1] 320370   7361
 
-$variables$print.equiv.clust
-[1] 457269    595
+$variables$countsbio.plot
+[1] 327731   6156
 
-$variables$print.lnam
-[1] 457864    642
+$variables$dat
+[1] 333887   1421
 
-$variables$print.netcancor
-[1] 458506   1870
+$variables$dat2save
+[1] 335308    401
 
-$variables$print.netlm
-[1] 460376   2741
+$variables$data2report
+[1] 335709   1640
 
-$variables$print.netlogit
-[1] 463117   2134
+$variables$degenes
+[1] 337349   2298
 
-$variables$print.qaptest
-[1] 465251    448
+$variables$explo.plot
+[1] 339647    416
 
-$variables$print.summary.bayes.factor
-[1] 465699   1556
+$variables$filtered.data
+[1] 340063   3504
 
-$variables$print.summary.bbnam
-[1] 467255    201
+$variables$int.mult
+[1] 343567    578
 
-$variables$print.summary.bbnam.actor
-[1] 467456   4015
+$variables$length.dat
+[1] 344145   7935
 
-$variables$print.summary.bbnam.fixed
-[1] 471471   1021
+$variables$length.plot
+[1] 352080   3549
 
-$variables$print.summary.bbnam.pooled
-[1] 472492   2859
+$variables$logscaling
+[1] 355629    704
 
-$variables$print.summary.blockmodel
-[1] 475351   2447
+$variables$make.ASCA.design
+[1] 356333    979
 
-$variables$print.summary.bn
-[1] 477798   3220
+$variables$miscolores
+[1] 357312    168
 
-$variables$print.summary.brokerage
-[1] 481018   1398
+$variables$myDfunction
+[1] 357480    608
 
-$variables$print.summary.cugtest
-[1] 482416   1153
+$variables$mypretty
+[1] 358088   1244
 
-$variables$print.summary.lnam
-[1] 483569   4402
+$variables$n.menor
+[1] 359332    421
 
-$variables$print.summary.netcancor
-[1] 487971   3338
+$variables$noceros
+[1] 359753    456
 
-$variables$print.summary.netlm
-[1] 491309   4083
+$variables$noiseq
+[1] 360209   4099
 
-$variables$print.summary.netlogit
-[1] 495392   4160
+$variables$noiseqbio
+[1] 364308   6161
 
-$variables$print.summary.qaptest
-[1] 499552   1154
+$variables$plot.y2
+[1] 370469   2410
 
-$variables$pstar
-[1] 500706   8639
+$variables$probdeg
+[1] 372879   1399
 
-$variables$qaptest
-[1] 509345   1304
+$variables$ranking
+[1] 374278   1038
 
-$variables$reachability
-[1] 510649   2096
+$variables$readData
+[1] 375316   2539
 
-$variables$read.dot
-[1] 512745   1508
+$variables$rpkm
+[1] 377855   1016
 
-$variables$read.nos
-[1] 514253   1427
+$variables$saturation.dat
+[1] 378871   6983
 
-$variables$redist
-[1] 515680   5254
+$variables$saturation.plot
+[1] 385854   6714
 
-$variables$rewire.ud
-[1] 520934   1289
+$variables$share.info
+[1] 392568   5438
 
-$variables$rewire.ws
-[1] 522223   1345
+$variables$sim.samples
+[1] 398006   1485
 
-$variables$rgbn
-[1] 523568   3630
+$variables$sinceros
+[1] 399491    761
 
-$variables$rgnm
-[1] 527198   2754
+$variables$tmm
+[1] 400252   1494
 
-$variables$rgnmix
-[1] 529952   3644
+$variables$uqua
+[1] 401746   1700
 
-$variables$rgraph
-[1] 533596   3332
 
-$variables$rguman
-[1] 536928   2836
+$references
+$references$`env::1`
+[1] 5706 6699
 
-$variables$rgws
-[1] 539764   1749
+$references$`env::10`
+[1] 20320   270
 
-$variables$rmperm
-[1] 541513   1394
+$references$`env::11`
+[1] 18100  1110
 
-$variables$rperm
-[1] 542907    710
+$references$`env::12`
+[1] 19210  1110
 
-$variables$sdmat
-[1] 543617   1626
+$references$`env::13`
+[1] 181233   4032
 
-$variables$se.lnam
-[1] 545243    906
+$references$`env::14`
+[1] 180761    472
 
-$variables$sedist
-[1] 546149   4970
+$references$`env::15`
+[1] 139943  20409
 
-$variables$simmelian
-[1] 551119   1029
+$references$`env::16`
+[1] 21762   183
 
-$variables$sociomatrixplot
-[1] 552148   3263
+$references$`env::17`
+[1] 21945  1535
 
-$variables$sr2css
-[1] 555411    826
+$references$`env::18`
+[1] 137619   2324
 
-$variables$stackcount
-[1] 556237    356
+$references$`env::19`
+[1] 123123    152
 
-$variables$stresscent
-[1] 556593   2275
+$references$`env::2`
+[1] 5398  140
 
-$variables$structdist
-[1] 558868   5365
+$references$`env::20`
+[1] 117923   5200
 
-$variables$structure.statistics
-[1] 564233   1325
+$references$`env::21`
+[1] 117182    741
 
-$variables$summary.bayes.factor
-[1] 565558   1076
+$references$`env::22`
+[1] 32250   152
 
-$variables$summary.bbnam
-[1] 566634    379
+$references$`env::23`
+[1] 23480  8770
 
-$variables$summary.bbnam.actor
-[1] 567013    385
+$references$`env::24`
+[1] 112363   4819
 
-$variables$summary.bbnam.fixed
-[1] 567398    386
+$references$`env::25`
+[1] 39689 49420
 
-$variables$summary.bbnam.pooled
-[1] 567784    386
+$references$`env::26`
+[1] 36359   347
 
-$variables$summary.blockmodel
-[1] 568170    334
+$references$`env::27`
+[1] 33177  3182
 
-$variables$summary.bn
-[1] 568504    376
+$references$`env::28`
+[1] 32402   775
 
-$variables$summary.brokerage
-[1] 568880    304
+$references$`env::29`
+[1] 36706   875
 
-$variables$summary.cugtest
-[1] 569184    381
+$references$`env::3`
+[1] 5538  168
 
-$variables$summary.lnam
-[1] 569565    349
+$references$`env::30`
+[1] 37581  1787
 
-$variables$summary.netcancor
-[1] 569914    383
+$references$`env::31`
+[1] 39368   321
 
-$variables$summary.netlm
-[1] 570297    379
+$references$`env::32`
+[1] 89109 23254
 
-$variables$summary.netlogit
-[1] 570676    382
+$references$`env::33`
+[1] 129040   2484
 
-$variables$summary.qaptest
-[1] 571058    381
+$references$`env::34`
+[1] 128873    167
 
-$variables$symmetrize
-[1] 571439   4336
+$references$`env::35`
+[1] 123275   5598
 
-$variables$triad.census
-[1] 575775   1992
+$references$`env::36`
+[1] 137467    152
 
-$variables$triad.classify
-[1] 577767   1663
+$references$`env::37`
+[1] 132265   5202
 
-$variables$upper.tri.remove
-[1] 579430   1036
+$references$`env::38`
+[1] 131524    741
 
-$variables$write.dl
-[1] 580466   2744
+$references$`env::39`
+[1] 160352  20409
 
-$variables$write.nos
-[1] 583210   1860
+$references$`env::4`
+[1] 12467   140
 
+$references$`env::5`
+[1] 16338  1700
 
-$references
-$references$`env::1`
-[1]  866 6681
+$references$`env::6`
+[1] 16069   269
 
-$references$`env::2`
-[1] 561 140
+$references$`env::7`
+[1] 12669  1700
 
-$references$`env::3`
-[1] 701 165
+$references$`env::8`
+[1] 14369  1700
 
-$references$`env::4`
-[1] 7609  140
+$references$`env::9`
+[1] 20590  1110
 
 
 $compressed
 [1] TRUE
 
